Package htsjdk.samtools.cram.structure
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Class Summary Class Description AlignmentSpan A span of reads on a single reference.CompressionHeader Container ContainerIO Methods to read and write CRAM containers.CramCompressionRecord CramCompressionRecord.BAM_FLAGS CramHeader A starting object when dealing with CRAM files.EncodingParams ReadTag CRAM counterpart ofSAMTag
.Slice CRAM slice is a logical union of blocks into for example alignment slices.SubstitutionMatrix -
Enum Summary Enum Description DataSeries Represents a specific CRAM record data series and its associated type and unique Content IDDataSeriesType Data series types known to CRAM.EncodingID Encoding ID as specified by Section 3 of the CRAM spec.