Package htsjdk.tribble.bed
Class FullBEDFeature.Exon
- java.lang.Object
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- htsjdk.tribble.bed.FullBEDFeature.Exon
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- Enclosing class:
- FullBEDFeature
public class FullBEDFeature.Exon extends Object
A sub region of a feature. For example, a Gene exon
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Constructor Summary
Constructors Constructor Description Exon(int start, int end)
Constructs ...
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getCdEnd()
Method descriptionint
getCdStart()
Method descriptionint
getCodingLength()
Method descriptionint
getNumber()
String
getValueString(double position)
void
setCodingEnd(int codingEnd)
Method descriptionvoid
setCodingStart(int codingStart)
Method descriptionvoid
setMrnaBase(int base)
void
setNumber(int number)
void
setPhase(int phase)
Method descriptionvoid
setReadingFrame(int offset)
Method descriptionvoid
setUTR(boolean utr)
Flag indicating that the entire exon is the UTR.
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Method Detail
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setMrnaBase
public void setMrnaBase(int base)
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setUTR
public void setUTR(boolean utr)
Flag indicating that the entire exon is the UTR.- Parameters:
utr
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setCodingStart
public void setCodingStart(int codingStart)
Method description- Parameters:
codingStart
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setCodingEnd
public void setCodingEnd(int codingEnd)
Method description- Parameters:
codingEnd
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setReadingFrame
public void setReadingFrame(int offset)
Method description- Parameters:
offset
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setPhase
public void setPhase(int phase)
Method description- Parameters:
phase
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getCdStart
public int getCdStart()
Method description- Returns:
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getCdEnd
public int getCdEnd()
Method description- Returns:
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getCodingLength
public int getCodingLength()
Method description- Returns:
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getValueString
public String getValueString(double position)
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getNumber
public int getNumber()
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setNumber
public void setNumber(int number)
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